README.md
pyproject.toml
setup.cfg
setup.py
spateo/__init__.py
spateo/configuration.py
spateo/cs.py
spateo/data_io.py
spateo/dd.py
spateo/errors.py
spateo/get_version.py
spateo/logging.py
spateo/pl.py
spateo/pp.py
spateo/sample_data.py
spateo/tdr.py
spateo/tl.py
spateo/utils.py
spateo/warnings.py
spateo/digitization/__init__.py
spateo/digitization/borderline.py
spateo/digitization/contour.py
spateo/digitization/grid.py
spateo/digitization/utils.py
spateo/io/__init__.py
spateo/io/bbs.py
spateo/io/bgi.py
spateo/io/image.py
spateo/io/image_utils.py
spateo/io/nanostring.py
spateo/io/slideseq.py
spateo/io/tenx.py
spateo/io/utils.py
spateo/plotting/__init__.py
spateo/plotting/interactive/__init__.py
spateo/plotting/interactive/agg.py
spateo/plotting/static/__init__.py
spateo/plotting/static/agg.py
spateo/plotting/static/align.py
spateo/plotting/static/bbs.py
spateo/plotting/static/colorlabel.py
spateo/plotting/static/contour.py
spateo/plotting/static/dotplot.py
spateo/plotting/static/geo.py
spateo/plotting/static/glm.py
spateo/plotting/static/interactions.py
spateo/plotting/static/lisa.py
spateo/plotting/static/polarity.py
spateo/plotting/static/position.py
spateo/plotting/static/scatters.py
spateo/plotting/static/space.py
spateo/plotting/static/utils.py
spateo/plotting/static/three_d_plot/__init__.py
spateo/plotting/static/three_d_plot/morphogenesis_plots.py
spateo/plotting/static/three_d_plot/three_dims_plots.py
spateo/plotting/static/three_d_plot/three_dims_plotter.py
spateo/preprocessing/__init__.py
spateo/preprocessing/aggregate.py
spateo/preprocessing/auxseg.py
spateo/preprocessing/filter.py
spateo/preprocessing/image.py
spateo/preprocessing/normalize.py
spateo/preprocessing/transform.py
spateo/segmentation/__init__.py
spateo/segmentation/align.py
spateo/segmentation/benchmark.py
spateo/segmentation/bp.py
spateo/segmentation/density.py
spateo/segmentation/em.py
spateo/segmentation/icell.py
spateo/segmentation/label.py
spateo/segmentation/moran.py
spateo/segmentation/qc.py
spateo/segmentation/simulation.py
spateo/segmentation/utils.py
spateo/segmentation/vi.py
spateo/segmentation/external/__init__.py
spateo/segmentation/external/cellpose.py
spateo/segmentation/external/deepcell.py
spateo/segmentation/external/stardist.py
spateo/tdr/__init__.py
spateo/tdr/models/__init__.py
spateo/tdr/models/mesh/__init__.py
spateo/tdr/models/mesh/mesh_model.py
spateo/tdr/models/mesh/mesh_utils.py
spateo/tdr/models/mesh/reconstruction_methods.py
spateo/tdr/models/morpho_models/__init__.py
spateo/tdr/models/morpho_models/arrow_model.py
spateo/tdr/models/morpho_models/line_model.py
spateo/tdr/models/morpho_models/morphofield_model.py
spateo/tdr/models/morpho_models/morphopath_model.py
spateo/tdr/models/morpho_models/uniform_model.py
spateo/tdr/models/pc/__init__.py
spateo/tdr/models/pc/pc_model.py
spateo/tdr/models/utilities/__init__.py
spateo/tdr/models/utilities/io.py
spateo/tdr/models/utilities/label_utils.py
spateo/tdr/models/utilities/model_utils.py
spateo/tdr/models/voxel/__init__.py
spateo/tdr/models/voxel/voxel_model.py
spateo/tdr/widgets/__init__.py
spateo/tdr/widgets/changes.py
spateo/tdr/widgets/clip.py
spateo/tdr/widgets/deep_interpolation.py
spateo/tdr/widgets/interpolation_nn.py
spateo/tdr/widgets/interpolations.py
spateo/tdr/widgets/morphogenesis.py
spateo/tdr/widgets/morphology.py
spateo/tdr/widgets/nn_losses.py
spateo/tdr/widgets/pick.py
spateo/tdr/widgets/slice.py
spateo/tdr/widgets/tree.py
spateo/tdr/widgets/utils.py
spateo/tdr/widgets/vtk_interpolate.py
spateo/tools/__init__.py
spateo/tools/architype.py
spateo/tools/cci_fdr.py
spateo/tools/cci_two_cluster.py
spateo/tools/cell_communication.py
spateo/tools/cluster_degs.py
spateo/tools/cluster_lasso.py
spateo/tools/coarse_align.py
spateo/tools/find_neighbors.py
spateo/tools/gene_expression_variance.py
spateo/tools/glm.py
spateo/tools/labels.py
spateo/tools/lisa.py
spateo/tools/live_wire.py
spateo/tools/paste.py
spateo/tools/roi.py
spateo/tools/spatial_degs.py
spateo/tools/spatial_regression_interpretation.py
spateo/tools/three_dims_align.py
spateo/tools/utils.py
spateo/tools/ST_regression/__init__.py
spateo/tools/ST_regression/generalized_lm.py
spateo/tools/ST_regression/regression_utils.py
spateo/tools/ST_regression/spatial_regression.py
spateo/tools/cluster/__init__.py
spateo/tools/cluster/cluster_spagcn.py
spateo/tools/cluster/find_clusters.py
spateo/tools/cluster/spagcn_utils.py
spateo/tools/cluster/utils.py
spateo/tools/spatial_impute/__init__.py
spateo/tools/spatial_impute/impute.py
spateo/tools/spatial_impute/impute_model.py
spateo/tools/spatial_impute/run_impute.py
spateo_release.egg-info/PKG-INFO
spateo_release.egg-info/SOURCES.txt
spateo_release.egg-info/dependency_links.txt
spateo_release.egg-info/requires.txt
spateo_release.egg-info/top_level.txt
tests/io/__init__.py
tests/io/test_bgi.py
tests/io/test_image.py
tests/io/test_utils.py
tests/preprocessing/__init__.py
tests/preprocessing/test_filter.py
tests/preprocessing/test_image.py
tests/segmentation/__init__.py
tests/segmentation/test_align.py
tests/segmentation/test_bp.py
tests/segmentation/test_density.py
tests/segmentation/test_em.py
tests/segmentation/test_icell.py
tests/segmentation/test_label.py
tests/segmentation/test_utils.py
tests/tools/__init__.py