"""Spatiotemporal modeling of spatial transcriptomics
"""
from . import (
    align,
    benchmark,
    bp,
    density,
    em,
    external,
    icell,
    label,
    moran,
    simulation,
    utils,
    vi,
)
from .align import refine_alignment
from .benchmark import compare
from .density import merge_densities, segment_densities
from .external.cellpose import cellpose
from .external.deepcell import deepcell
from .external.stardist import stardist
from .icell import mask_cells_from_stain, mask_nuclei_from_stain, score_and_mask_pixels
from .label import (
    augment_labels,
    expand_labels,
    find_peaks,
    find_peaks_from_mask,
    find_peaks_with_erosion,
    label_connected_components,
    watershed,
)
from .qc import generate_random_labels, generate_random_labels_like, select_qc_regions
