MANIFEST.in
README.md
setup.py
Simba_UW_tf_dev.egg-info/PKG-INFO
Simba_UW_tf_dev.egg-info/SOURCES.txt
Simba_UW_tf_dev.egg-info/dependency_links.txt
Simba_UW_tf_dev.egg-info/entry_points.txt
Simba_UW_tf_dev.egg-info/requires.txt
Simba_UW_tf_dev.egg-info/top_level.txt
simba/About_me_050122_1.png
simba/FSTCC.py
simba/Kleinberg_burst_analysis.py
simba/ROI_add_to_features.py
simba/ROI_add_to_features_new.py
simba/ROI_add_to_features_old.py
simba/ROI_add_to_features_old2.py
simba/ROI_add_to_features_old3.py
simba/ROI_analysis.py
simba/ROI_analysis_2.py
simba/ROI_analysis_3.py
simba/ROI_analysis_old.py
simba/ROI_directionality_to_other_animals.py
simba/ROI_directionality_to_other_animals_visualize.py
simba/ROI_draw_defined.py
simba/ROI_freehand_draw_3.py
simba/ROI_multiply.py
simba/ROI_plot.py
simba/ROI_plot_multi_process.py
simba/ROI_plot_new.py
simba/ROI_plot_old.py
simba/ROI_plot_old_2.py
simba/ROI_process_movement.py
simba/ROI_process_movement_old.py
simba/ROI_process_movement_old2.py
simba/ROI_reset.py
simba/ROI_time_bins.py
simba/ROI_visualize_features.py
simba/SimBA.py
simba/SimBA_040921.py
simba/SimBA_dash_app.py
simba/SimBA_logo.ico
simba/SimBA_smidm.py
simba/TheGoldenLab.PNG
simba/TheGoldenLab.png
simba/TheGoldenLab_aboutme.png
simba/__init__.py
simba/adv_label.py
simba/adv_load_label.py
simba/appendMars.py
simba/append_boris.py
simba/append_boris_old.py
simba/classifications_per_ROI.py
simba/classifierValidation.py
simba/create_project_ini.py
simba/data_plot.py
simba/define_new_pose_config.py
simba/dlc_change_yamlfile.py
simba/dpk_create_project_ini.py
simba/drop_bp_cords.py
simba/drop_bps.py
simba/ethovision_import.py
simba/extract_frames_fast.py
simba/extract_seqframes.py
simba/ez_lineplot.py
simba/gannt_creator.py
simba/gantt.py
simba/gantt_video.py
simba/get_coordinates_tools_v2.py
simba/golden.png
simba/import_solomon.py
simba/import_trk.py
simba/import_videos_csv_project_ini.py
simba/interpolate_pose.py
simba/json2csv.py
simba/labelling_aggression.py
simba/line_plot.py
simba/load_labelling_aggression.py
simba/load_labelling_aggression_hxt.py
simba/load_project_unit_tests.py
simba/merge_frames.py
simba/merge_frames_movie.py
simba/merge_frames_movie_old.py
simba/merge_frames_movie_old_2.py
simba/merge_movie_ffmpeg.py
simba/misc_tools.py
simba/multiplecrop.py
simba/path_plot.py
simba/path_plot_new.py
simba/play_video.py
simba/play_video_pseudo.py
simba/plot_heatmap.py
simba/plot_heatmap_location_new.py
simba/plot_pose_in_dir.py
simba/plot_threshold.py
simba/plotly_create_h5.py
simba/prob_graph.py
simba/probability_plot_creator.py
simba/process_data_log.py
simba/process_movement.py
simba/process_movement_new.py
simba/process_severity.py
simba/process_videos_automation.py
simba/process_videos_automation_linux.py
simba/process_videos_automation_win.py
simba/pseudoLabel.py
simba/pup_retrieval_1.py
simba/read_DANNCE_mat.py
simba/read_DLCmulti_h5_function.py
simba/read_config_unit_tests.py
simba/reorganize_animal_bp.py
simba/requirements.txt
simba/reset_poseConfig.py
simba/reverse_tracking_order.py
simba/reverse_tracking_order_new.py
simba/run_RF_model.py
simba/run_RF_model_old.py
simba/run_dash_tkinter.py
simba/run_model_new.py
simba/runmodel_1st.py
simba/rw_dfs.py
simba/shap_calcs.py
simba/shap_visualize.py
simba/sklearn_DLC_RF_train_model.py
simba/sleap_bottom_up_convert.py
simba/sleap_bottom_up_convert_old.py
simba/sleap_bottom_up_convert_smidm.py
simba/sleap_import_new.py
simba/splash.pptx
simba/splash_050122.png
simba/test.png
simba/test_unsupervised.py
simba/timeBins_classifiers.py
simba/timeBins_classifiers_old.py
simba/timeBins_movement.py
simba/timeBins_movement_old.py
simba/timeBins_movement_old2.py
simba/timebins_clf_analyzer.py
simba/timebins_movement_analyzer.py
simba/tkinter_functions.py
simba/train_model_2.py
simba/train_model_3_scramble.py
simba/train_model_functions.py
simba/train_multiple_models_from_meta.py
simba/train_multiple_models_from_meta_scramble.py
simba/train_mutiple_models_from_meta_new.py
simba/train_single_model.py
simba/validate_model_on_single_video.py
simba/.idea/.gitignore
simba/.idea/.name
simba/.idea/encodings.xml
simba/.idea/misc.xml
simba/.idea/modules.xml
simba/.idea/rSettings.xml
simba/.idea/simba.iml
simba/.idea/workspace.xml
simba/.idea/inspectionProfiles/Project_Default.xml
simba/.idea/libraries/R_User_Library.xml
simba/assets/._dash_simba_base.css
simba/assets/TheGoldenLab.PNG
simba/assets/dash_simba_base.css
simba/assets/shap/UbuntuMono-Regular.ttf
simba/assets/shap/animal_distances.jpg
simba/assets/shap/baseline_scale.jpg
simba/assets/shap/color_bar.jpg
simba/assets/shap/down_arrow.jpg
simba/assets/shap/intruder_movement.jpg
simba/assets/shap/intruder_shape.jpg
simba/assets/shap/resident_intruder_movement.jpg
simba/assets/shap/resident_intruder_shape.jpg
simba/assets/shap/resident_movement.jpg
simba/assets/shap/resident_shape.jpg
simba/assets/shap/side_scale.jpg
simba/assets/shap/side_scale_5.jpg
simba/assets/shap/ubuntu.regular.ttf
simba/assets/shap/feature_categories/shap_feature_categories.csv
simba/assets/stl/grid_floor.stl
simba/assets/stl/operant_lever.stl
simba/assets/stl/operant_tray.stl
simba/assets/stl/operant_walls.stl
simba/dpk_script/Predict_new_video.py
simba/dpk_script/Visualize_video.py
simba/dpk_script/__init__.py
simba/dpk_script/annotator.py
simba/dpk_script/create_annotation_set.py
simba/dpk_script/detect_merge_outliers.py
simba/dpk_script/train_model.py
simba/features_scripts/RFECV.py
simba/features_scripts/drop_bp_cords.py
simba/features_scripts/extract_features_14bp.py
simba/features_scripts/extract_features_14bp_from_16bp.py
simba/features_scripts/extract_features_16bp-8-more.py
simba/features_scripts/extract_features_16bp.py
simba/features_scripts/extract_features_16bp_new.py
simba/features_scripts/extract_features_16bp_old.py
simba/features_scripts/extract_features_16bp_old_2.py
simba/features_scripts/extract_features_4bp.py
simba/features_scripts/extract_features_7bp.py
simba/features_scripts/extract_features_8bp.py
simba/features_scripts/extract_features_9bp.py
simba/features_scripts/extract_features_user_defined.py
simba/features_scripts/extract_features_user_defined_new.py
simba/features_scripts/extract_features_user_defined_old.py
simba/features_scripts/feature_extractor_14bp.py
simba/features_scripts/feature_extractor_16bp.py
simba/features_scripts/feature_extractor_4bp.py
simba/features_scripts/feature_extractor_7bp.py
simba/features_scripts/feature_extractor_8bp.py
simba/features_scripts/pearsons_filtering.py
simba/features_scripts/tsne.py
simba/features_scripts/unit_tests.py
simba/features_scripts/.idea/.gitignore
simba/features_scripts/.idea/.name
simba/features_scripts/.idea/encodings.xml
simba/features_scripts/.idea/features_scripts.iml
simba/features_scripts/.idea/misc.xml
simba/features_scripts/.idea/modules.xml
simba/features_scripts/.idea/workspace.xml
simba/features_scripts/.idea/inspectionProfiles/Project_Default.xml
simba/features_scripts/.idea/libraries/R_User_Library.xml
simba/features_scripts/__pycache__/extract_features_16bp.extract_features_wotarget_16.locals.EuclidianDistCald-35.py36.1.nbc
simba/features_scripts/__pycache__/extract_features_16bp.extract_features_wotarget_16.locals.EuclidianDistCald-35.py36.nbi
simba/features_scripts/__pycache__/extract_features_16bp.extract_features_wotarget_16.locals.EuclidianDistCald-37.py36.1.nbc
simba/features_scripts/__pycache__/extract_features_16bp.extract_features_wotarget_16.locals.EuclidianDistCald-37.py36.nbi
simba/outlier_scripts/__init__.py
simba/outlier_scripts/skip_outlierCorrection.py
simba/outlier_scripts/location/__init__.py
simba/outlier_scripts/location/correct_devs_loc_14bp.py
simba/outlier_scripts/location/correct_devs_loc_15bp.py
simba/outlier_scripts/location/correct_devs_loc_16bp.py
simba/outlier_scripts/location/correct_devs_loc_4bp.py
simba/outlier_scripts/location/correct_devs_loc_7bp.py
simba/outlier_scripts/location/correct_devs_loc_8bp.py
simba/outlier_scripts/location/correct_devs_loc_user_defined.py
simba/outlier_scripts/location/correct_devs_loc_user_defined_monte_backup.py
simba/outlier_scripts/location/correct_devs_loc_user_defined_old.py
simba/outlier_scripts/movement/__init__.py
simba/outlier_scripts/movement/correct_devs_mov_14bp.py
simba/outlier_scripts/movement/correct_devs_mov_15bp.py
simba/outlier_scripts/movement/correct_devs_mov_16bp.py
simba/outlier_scripts/movement/correct_devs_mov_4bp.py
simba/outlier_scripts/movement/correct_devs_mov_7bp.py
simba/outlier_scripts/movement/correct_devs_mov_8bp.py
simba/outlier_scripts/movement/correct_devs_mov_9bp.py
simba/outlier_scripts/movement/correct_devs_mov_user_defined.py
simba/outlier_scripts/movement/correct_devs_mov_user_defined_old.py
simba/outlier_scripts/movement/feature_selection.py
simba/outlier_scripts/movement/rw_dfs.py
simba/plotlyScripts/__init__.py
simba/plotlyScripts/combine_to_h5.py
simba/pose_configurations/bp_names/bp_names.csv
simba/pose_configurations/configuration_names/pose_config_names.csv
simba/pose_configurations/no_animals/no_animals.csv
simba/pose_configurations/schematics/Picture1.png
simba/pose_configurations/schematics/Picture10.png
simba/pose_configurations/schematics/Picture11.png
simba/pose_configurations/schematics/Picture12.png
simba/pose_configurations/schematics/Picture13.png
simba/pose_configurations/schematics/Picture2.png
simba/pose_configurations/schematics/Picture3.png
simba/pose_configurations/schematics/Picture4.png
simba/pose_configurations/schematics/Picture5.png
simba/pose_configurations/schematics/Picture6.png
simba/pose_configurations/schematics/Picture7.png
simba/pose_configurations/schematics/Picture8.png
simba/pose_configurations/schematics/Picture9.png
simba/roi_tools/ROI_define.py
simba/roi_tools/ROI_image.py
simba/roi_tools/ROI_menus.py
simba/roi_tools/ROI_move_shape.py
simba/roi_tools/ROI_multiply.py
simba/roi_tools/ROI_reset.py
simba/roi_tools/ROI_size_calculations.py
simba/roi_tools/ROI_zoom.py
simba/sklearn_plot_scripts/__init__.py
simba/sklearn_plot_scripts/plot_machine_results.py
simba/sklearn_plot_scripts/plot_sklearn_results_2.py
simba/sklearn_plot_scripts/plot_sklearn_results_2_single.py
simba/sklearn_plot_scripts/plot_sklearn_results_all.py
simba/sklearn_plot_scripts/plot_sklearn_results_old.py
simba/sklearn_plot_scripts/.idea/.gitignore
simba/sklearn_plot_scripts/.idea/.name
simba/sklearn_plot_scripts/.idea/encodings.xml
simba/sklearn_plot_scripts/.idea/misc.xml
simba/sklearn_plot_scripts/.idea/modules.xml
simba/sklearn_plot_scripts/.idea/sklearn_plot_scripts.iml
simba/sklearn_plot_scripts/.idea/workspace.xml
simba/sklearn_plot_scripts/.idea/inspectionProfiles/Project_Default.xml
simba/sklearn_plot_scripts/.idea/libraries/R_User_Library.xml
simba/train_model/__init__.py
simba/train_model/train_model_user_defined.py