CHANGELOG.md
LICENSE
MANIFEST.in
README.md
README.zh-CN.md
pyproject.toml
docs/customizing.md
docs/customizing.zh-CN.md
docs/networks.md
docs/networks.zh-CN.md
docs/regression.md
docs/regression.zh-CN.md
segforge/__init__.py
segforge.egg-info/PKG-INFO
segforge.egg-info/SOURCES.txt
segforge.egg-info/dependency_links.txt
segforge.egg-info/entry_points.txt
segforge.egg-info/requires.txt
segforge.egg-info/top_level.txt
segforge/dataloading/__init__.py
segforge/dataloading/data_loader_skel.py
segforge/dataset_conversion/AIIB2023.py
segforge/dataset_conversion/BTCV.py
segforge/dataset_conversion/DRIVE.py
segforge/dataset_conversion/LiTS2017.py
segforge/dataset_conversion/NeuronSWC.py
segforge/dataset_conversion/Parse2022.py
segforge/dataset_conversion/__init__.py
segforge/inference/__init__.py
segforge/inference/binary255.py
segforge/inference/predict_binary255.py
segforge/inference/predict_regression.py
segforge/losses/__init__.py
segforge/losses/cldice.py
segforge/losses/dropout_ce.py
segforge/losses/focal.py
segforge/losses/generalized_dice.py
segforge/losses/monai_adapters.py
segforge/losses/skeleton_recall.py
segforge/losses/surface.py
segforge/losses/tversky.py
segforge/networks/__init__.py
segforge/networks/mamba.py
segforge/networks/registry.py
segforge/networks/cmunext/__init__.py
segforge/networks/cmunext/builders.py
segforge/networks/cmunext/cmunext.py
segforge/networks/cotr/CNNBackbone.py
segforge/networks/cotr/ResTranUnet.py
segforge/networks/cotr/__init__.py
segforge/networks/cotr/builders.py
segforge/networks/cotr/DeTrans/DeformableTrans.py
segforge/networks/cotr/DeTrans/__init__.py
segforge/networks/cotr/DeTrans/position_encoding.py
segforge/networks/cotr/DeTrans/ops/__init__.py
segforge/networks/cotr/DeTrans/ops/functions/__init__.py
segforge/networks/cotr/DeTrans/ops/functions/ms_deform_attn_func.py
segforge/networks/cotr/DeTrans/ops/modules/__init__.py
segforge/networks/cotr/DeTrans/ops/modules/ms_deform_attn.py
segforge/networks/dlkanet/__init__.py
segforge/networks/dlkanet/builders.py
segforge/networks/dlkanet/deform_lka.py
segforge/networks/dlkanet/dlkanet.py
segforge/networks/dscnet/__init__.py
segforge/networks/dscnet/builders.py
segforge/networks/dscnet/dscnet.py
segforge/networks/e_catbrats/__init__.py
segforge/networks/e_catbrats/builders.py
segforge/networks/e_catbrats/e_catbrats.py
segforge/networks/glims/__init__.py
segforge/networks/glims/builders.py
segforge/networks/glims/glims.py
segforge/networks/glims/modules/CSAB.py
segforge/networks/glims/modules/DepthWiseAtriousBlocks.py
segforge/networks/glims/modules/__init__.py
segforge/networks/glims/modules/conv_generator.py
segforge/networks/layers/__init__.py
segforge/networks/layers/akconv.py
segforge/networks/layers/condconv.py
segforge/networks/layers/dsconv.py
segforge/networks/layers/inceptdw.py
segforge/networks/layers/odconv.py
segforge/networks/layers/pconv.py
segforge/networks/layers/wtconv.py
segforge/networks/lightmunet/__init__.py
segforge/networks/lightmunet/builders.py
segforge/networks/lightmunet/lightmunet.py
segforge/networks/liunet/__init__.py
segforge/networks/liunet/builders.py
segforge/networks/liunet/liunet.py
segforge/networks/lkmunet/__init__.py
segforge/networks/lkmunet/builders.py
segforge/networks/lkmunet/lkmunet.py
segforge/networks/monai/__init__.py
segforge/networks/monai/_wrappers.py
segforge/networks/monai/attention_unet.py
segforge/networks/monai/basic_unet.py
segforge/networks/monai/basic_unetplusplus.py
segforge/networks/monai/dynunet.py
segforge/networks/monai/mednext.py
segforge/networks/monai/segresnet.py
segforge/networks/monai/swin_unetr.py
segforge/networks/monai/unet.py
segforge/networks/monai/unetr.py
segforge/networks/monai/vnet.py
segforge/networks/nnformer/__init__.py
segforge/networks/nnformer/builders.py
segforge/networks/nnformer/nnformer.py
segforge/networks/nnmamba/__init__.py
segforge/networks/nnmamba/builders.py
segforge/networks/nnmamba/nnmamba.py
segforge/networks/plunet/__init__.py
segforge/networks/plunet/builders.py
segforge/networks/plunet/plunet.py
segforge/networks/segformer3d/__init__.py
segforge/networks/segformer3d/builders.py
segforge/networks/segformer3d/segformer3d.py
segforge/networks/segmamba/__init__.py
segforge/networks/segmamba/bimamba.py
segforge/networks/segmamba/builders.py
segforge/networks/segmamba/segmamba.py
segforge/networks/segmamba/ops/__init__.py
segforge/networks/segmamba/ops/mamba_inner_no_out_proj.py
segforge/networks/stunet/__init__.py
segforge/networks/stunet/builders.py
segforge/networks/stunet/stunet.py
segforge/networks/umamba/UMambaBot.py
segforge/networks/umamba/UMambaEnc.py
segforge/networks/umamba/__init__.py
segforge/networks/umamba/builders.py
segforge/networks/unetrpp/__init__.py
segforge/networks/unetrpp/builders.py
segforge/networks/unetrpp/components.py
segforge/networks/unetrpp/layers.py
segforge/networks/unetrpp/transformerblock.py
segforge/networks/unetrpp/unetrpp.py
segforge/networks/unext/__init__.py
segforge/networks/unext/builders.py
segforge/networks/unext/unext.py
segforge/networks/uxnet/__init__.py
segforge/networks/uxnet/builders.py
segforge/networks/uxnet/uxnet.py
segforge/networks/uxnet/uxnet_encoder.py
segforge/networks/wnet/WNet2D.py
segforge/networks/wnet/WNet3D.py
segforge/networks/wnet/__init__.py
segforge/networks/wnet/builders.py
segforge/regression/__init__.py
segforge/regression/dataloader.py
segforge/regression/export.py
segforge/regression/label_manager.py
segforge/regression/losses.py
segforge/regression/metrics.py
segforge/regression/planner.py
segforge/regression/preprocessor.py
segforge/regression/register.py
segforge/regression/transforms.py
segforge/training/__init__.py
segforge/training/bases/__init__.py
segforge/training/bases/arch.py
segforge/training/bases/mixins/__init__.py
segforge/training/bases/mixins/benchmark.py
segforge/training/bases/mixins/distance_regression.py
segforge/training/bases/mixins/geometry.py
segforge/training/bases/mixins/loss.py
segforge/training/bases/mixins/optim.py
segforge/training/bases/mixins/skeleton_recall.py
segforge/training/nnUNetTrainer/AttentionUnetTrainer.py
segforge/training/nnUNetTrainer/BasicUNetPlusPlusTrainer.py
segforge/training/nnUNetTrainer/BasicUNetTrainer.py
segforge/training/nnUNetTrainer/CMUNeXtTrainer.py
segforge/training/nnUNetTrainer/CoTrTrainer.py
segforge/training/nnUNetTrainer/DLKANetTrainer.py
segforge/training/nnUNetTrainer/DSCNetTrainer.py
segforge/training/nnUNetTrainer/DynUNetTrainer.py
segforge/training/nnUNetTrainer/E_CATBraTSTrainer.py
segforge/training/nnUNetTrainer/GLIMSTrainer.py
segforge/training/nnUNetTrainer/LIUNetTrainer.py
segforge/training/nnUNetTrainer/LKMUNetTrainer.py
segforge/training/nnUNetTrainer/LightMUNetTrainer.py
segforge/training/nnUNetTrainer/MedNeXtTrainer.py
segforge/training/nnUNetTrainer/MedNeXtV2Trainer.py
segforge/training/nnUNetTrainer/PLUNetTrainer.py
segforge/training/nnUNetTrainer/STUNetTrainer.py
segforge/training/nnUNetTrainer/SegFormer3DTrainer.py
segforge/training/nnUNetTrainer/SegMambaTrainer.py
segforge/training/nnUNetTrainer/SegResNetTrainer.py
segforge/training/nnUNetTrainer/SwinUNETRTrainer.py
segforge/training/nnUNetTrainer/UMambaTrainer.py
segforge/training/nnUNetTrainer/UNETRPlusPlusTrainer.py
segforge/training/nnUNetTrainer/UNETRTrainer.py
segforge/training/nnUNetTrainer/UNetTrainer.py
segforge/training/nnUNetTrainer/UNextTrainer.py
segforge/training/nnUNetTrainer/UXNetTrainer.py
segforge/training/nnUNetTrainer/VNetTrainer.py
segforge/training/nnUNetTrainer/WNetTrainer.py
segforge/training/nnUNetTrainer/__init__.py
segforge/training/nnUNetTrainer/nnFormerTrainer.py
segforge/training/nnUNetTrainer/nnMambaTrainer.py
segforge/training/nnUNetTrainer/nnUNetDistanceTrainer.py
segforge/transforms/__init__.py
segforge/transforms/skeletonization.py
segforge/utilities/__init__.py
segforge/utilities/mixin_discovery.py
segforge/utilities/network_discovery.py
segforge/utilities/plan_and_preprocess_regression.py
segforge/utilities/system_benchmark.py
segforge/utilities/trainer_discovery.py
tests/test_binary255_label_manager.py
tests/test_layers_dscnet.py
tests/test_loss_trainers.py
tests/test_mixin_discovery.py
tests/test_network_discovery.py
tests/test_predict_regression.py
tests/test_regression_losses.py
tests/test_skeleton_recall.py
tests/test_system_benchmark.py
tests/test_trainer_bases.py
tests/test_trainer_discovery.py