Links for germline allele sets

igblast:
  only mouse: http://www.ncbi.nlm.nih.gov/igblast/showGermline.cgi

imgt:
  download fastas:
    old page with links to each species/locus: http://www.imgt.org/vquest/refseqh.html
    new page with subdirs for each species: https://www.imgt.org/download/V-QUEST/IMGT_V-QUEST_reference_directory/
      - e.g. human ig is here https://www.imgt.org/download/V-QUEST/IMGT_V-QUEST_reference_directory/Homo_sapiens/IG/
    instructions to download leaders: https://www.imgt.org/FAQ/GeneDB.php
  locus descriptions:
    http://www.imgt.org/IMGTrepertoire/LocusGenes/
      to get codon positions, start there, then
        - go to the desired locus under 7. Gene Tables
        - click on the individual allele
        - then
          - for v, click on the individual gene/family
          - for j, scroll down until the "overview of..." link
  individual examples:
    codon positions for all human trb j genes
      http://www.imgt.org/IMGTrepertoire/Proteins/alleles/human/TRB/TRBJ/Hu_TRBJoverview.html
    codon positions for all mouse tra j genes
      http://www.imgt.org/IMGTrepertoire/Proteins/alleles/mouse/TRA/TRAJ/Mu_TRAJoverview.html
    v summaries:
      http://www.imgt.org/textes/IMGTrepertoire/index.php?section=LocusGenes&repertoire=genetable&species=human&group=IGHV
c genes (seem to have to copy/paste them):
  https://www.imgt.org/vquest/refseqh.html#constant-sets
