      ;`.                       ,'/
      |`.`-.      _____      ,-;,'|
      |  `-.\__,-'     `-.__//'   |
      |     `|               \ ,  |
      `.  ```                 ,  .'
        \_`      .     ,   ,  `_/
          \    ^  `   ,   ^ ` /
           | '  |  ____  | , |
           |     ,'    `.    |
           |    (  O' O  )   |
           `.    \__,.__/   ,'
             `-._  `--'  _,'
                 `------'

# ham

`ham` is a general-purpose HMM compiler with a focus on minimizing both run time and development time.
It began from [StochHMM](https://github.com/KorfLab/StochHMM), but has been completely rewritten.

`ham` is free software under the GPL v3.

The manual is available [here](https://github.com/psathyrella/ham/blob/master/manual.md).
