LICENSE.md
MANIFEST.in
Makefile
README.md
build.py
requirements.txt
setup.py
images/ONT_logo_590x106.png
medaka/__init__.py
medaka/align.py
medaka/common.py
medaka/datastore.py
medaka/executor.py
medaka/features.py
medaka/keras_ext.py
medaka/labels.py
medaka/medaka.py
medaka/medaka_counts.py
medaka/models.py
medaka/options.py
medaka/prediction.py
medaka/rle.py
medaka/smolecule.py
medaka/stitch.py
medaka/training.py
medaka/variant.py
medaka/vcf.py
medaka/wrappers.py
medaka.egg-info/PKG-INFO
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medaka/data/r103_min_high_g345_model.hdf5
medaka/data/r103_min_high_g360_model.hdf5
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medaka/data/r103_prom_snp_g3210_model.hdf5
medaka/data/r103_prom_variant_g3210_model.hdf5
medaka/data/r941_min_high_g344_model.hdf5
medaka/data/r941_min_high_g351_model.hdf5
medaka/data/r941_min_high_g360_model.hdf5
medaka/data/r941_prom_high_g344_model.hdf5
medaka/data/r941_prom_high_g360_model.hdf5
medaka/data/r941_prom_high_g4011_model.hdf5
medaka/data/r941_prom_snp_g360_model.hdf5
medaka/data/r941_prom_variant_g360_model.hdf5
scripts/hdf2tf.py
scripts/medaka_consensus
scripts/medaka_variant
scripts/mini_align
src/fastrle.c
src/fastrle.h
src/khash.h
src/kseq.h
src/kstring.c
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src/kvec.h
src/medaka_bamiter.c
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