LICENSE
MANIFEST.in
README.md
pyproject.toml
src/GICTrack.py
src/GICTrack.egg-info/PKG-INFO
src/GICTrack.egg-info/SOURCES.txt
src/GICTrack.egg-info/dependency_links.txt
src/GICTrack.egg-info/requires.txt
src/GICTrack.egg-info/top_level.txt
src/gictrack/Centenary_Institute_logo.png
src/gictrack/GIC.png
src/gictrack/GICTrack.py
src/gictrack/__init__.py
src/gictrack/SPT_LocAndTrack/LICENSE.md
src/gictrack/SPT_LocAndTrack/MemoryEfficientND2reader.m
src/gictrack/SPT_LocAndTrack/MemoryEfficientND2reader_2colors.m
src/gictrack/SPT_LocAndTrack/ParallelProcess_fastSPT_JF549.m
src/gictrack/SPT_LocAndTrack/ParallelProcess_fastSPT_JF646.m
src/gictrack/SPT_LocAndTrack/ParallelProcess_slowSPT_JF646.m
src/gictrack/SPT_LocAndTrack/README.md
src/gictrack/SPT_LocAndTrack/SerialProcess_PALM_2color_549_646_ND2_v3.m
src/gictrack/SPT_LocAndTrack/SerialProcess_PALM_JF549.m
src/gictrack/SPT_LocAndTrack/SerialProcess_PALM_JF646.m
src/gictrack/SPT_LocAndTrack/SerialProcess_fastSPT_2color_549_646.m
src/gictrack/SPT_LocAndTrack/SerialProcess_fastSPT_JF549.m
src/gictrack/SPT_LocAndTrack/SerialProcess_fastSPT_JF549_TIFF.m
src/gictrack/SPT_LocAndTrack/SerialProcess_fastSPT_JF646.m
src/gictrack/SPT_LocAndTrack/UploadExistingData.m
src/gictrack/SPT_LocAndTrack/__init__.py
src/gictrack/SPT_LocAndTrack/computeMSD.m
src/gictrack/SPT_LocAndTrack/fastSPT_3D.m
src/gictrack/SPT_LocAndTrack/fastSPT_JF549_TIFF_Diffusion.m
src/gictrack/SPT_LocAndTrack/fastSPT_JF549_TIFF_Diffusion_Local.m
src/gictrack/SPT_LocAndTrack/fastSPT_JF549_TIFF_Diffusion_v221124.m
src/gictrack/SPT_LocAndTrack/fastSPT_JF549_TIFF_Diffusion_v230301.m
src/gictrack/SPT_LocAndTrack/fastSPT_JF549_TIFF_Diffusion_v230309_PreCleanUp.m
src/gictrack/SPT_LocAndTrack/get_autocorr.m
src/gictrack/SPT_LocAndTrack/tiffread.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/ReadImageJROI.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/all_max_2d.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab.zip
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/buildTracks2.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/buildTracks2_ASH.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/carte_H0H1_1vue.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/deflat_part_est.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/deplt_GN_estimation.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/detect_et_estime_part_1vue.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/detect_et_estime_part_1vue_deflt.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/detect_et_estime_part_1vue_deflt_backup.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/estim_param_part_GN.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/expand_w.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/gausswin2.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/loadtiff.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/localizeParticles.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/localizeParticlesPar.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/localizeParticles_ASH.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/localizeParticles_ASH_old.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/main.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/streamToDisk.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfCheckJavaMemory.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfCheckJavaPath.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfGetFileExtensions.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfGetPlane.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfGetPlaneAtZCT.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfGetReader.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfInitLogging.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfOpen3DVolume.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfTestInRange.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfUpgradeCheck.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfopen.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bfsave.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/bioformats_package.jar
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/createMinimalOMEXMLMetadata.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfCheckJavaMemory.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfCheckJavaPath.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfGetFileExtensions.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfGetPlane.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfGetReader.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfOpen3DVolume.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfUpgradeCheck.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfopen.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/bfsave.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/createMinimalOMEXMLMetadata.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab2/private/is_octave.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/bfmatlab/private/is_octave.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/saveastiff_4.0/TIFF Tag Viewer.url
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/saveastiff_4.0/license.txt
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/saveastiff_4.0/loadtiff.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/saveastiff_4.0/saveastiff.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/saveastiff_4.0/saveastiff_demo.m
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/saveastiff_4.0/test_10frames.tif
src/gictrack/SPT_LocAndTrack/Batch_MTT_code/saveastiff_4.0/write3Dtiff.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_1cmp_CORR_fit.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_1cmp_CORR_fun.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_1cmp_fit.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_1cmp_fun.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_2cmp_CORR_fit.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_2cmp_CORR_fun.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_2cmp_fit.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_2cmp_fun.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_3cmp_CORR_fit.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_3cmp_CORR_fun.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_3cmp_fit.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/JDHfixedT_3cmp_fun.m
src/gictrack/SPT_LocAndTrack/CMP_Fit/calculateJDH.m