"""Mapping Vector Field of Single Cells
"""

from .fate import andecestor, fate, fate_bias
from .least_action_path import (
    GeneLeastActionPath,
    LeastActionPath,
    get_init_path,
    least_action,
)
from .perturbation import (
    KO,
    perturbation,
    rank_perturbation_cell_clusters,
    rank_perturbation_cells,
    rank_perturbation_genes,
)
from .state_graph import state_graph, tree_model
from .trajectory import GeneTrajectory, Trajectory
from .trajectory_analysis import (
    calc_mean_exit_time,
    calc_mean_first_passage_time,
    mean_first_passage_time,
)
from .tscRNA_seq import get_pulse_r0

# https://stackoverflow.com/questions/31079047/python-pep8-class-in-init-imported-but-not-used
__all__ = [
    "fate",
    "fate_bias",
    "andecestor",
    "state_graph",
    "tree_model",
    "get_init_path",
    "least_action",
    "KO",
    "perturbation",
    "rank_perturbation_cells",
    "rank_perturbation_genes",
    "rank_perturbation_cell_clusters",
    "Trajectory",
    "GeneTrajectory",
    "LeastActionPath",
    "GeneLeastActionPath",
    "get_pulse_r0",
    "calc_mean_exit_time",
    "calc_mean_first_passage_time",
    "mean_first_passage_time",
]
