from setuptools import setup, find_packages

# import numpy as np
# from version import __version__
from pathlib import Path

with open("README.md", "r") as fh:
    long_description = fh.read()

setup(
    name="dynamo-release",
    version="0.96.0",
    python_requires=">=3.7",
    install_requires=[l.strip() for l in Path("requirements.txt").read_text("utf-8").splitlines()],  # 'yt>=3.5.1',
    extras_require={
        "spatial": ["pysal>2.0.0"],
        "interactive_plots": ["plotly"],
        "network": ["networkx", "nxviz", "hiveplotlib"],
        "dimension_reduction": ["fitsne>=1.0.1", "dbmap>=1.1.2"],
        "test": ["sympy>=1.4", "networkx"],
        "bigdata_visualization": ["datashader>=0.9.0", "bokeh>=1.4.0", "holoviews>=1.9.2"],
    },
    packages=find_packages(),
    classifiers=[
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: BSD License",
        "Operating System :: OS Independent",
    ],
    #     include_dirs=[np.get_include()],
    author="Xiaojie Qiu, Yan Zhang, Ke Ni",
    author_email="xqiu.sc@gmail.com",
    description="Mapping Vector Field of Single Cells",
    long_description=long_description,
    long_description_content_type="text/markdown",
    license="BSD",
    url="https://github.com/aristoteleo/dynamo-release",
    download_url=f"https://github.com/aristoteleo/dynamo-release",
    keywords=[
        "VectorField",
        "singlecell",
        "velocity",
        "scNT-seq",
        "sci-fate",
        "NASC-seq",
        "scSLAMseq",
        "potential",
    ],
)
