from setuptools import setup, find_packages
# import numpy as np
# from version import __version__
from pathlib import Path

with open("README.md", "r") as fh:
    long_description = fh.read()

setup(
    name="dynamo-release",
    version="0.93",
    python_requires=">=3.6",
    install_requires=[
        l.strip() for l in Path('requirements.txt').read_text('utf-8').splitlines()
    ], # 'yt>=3.5.1',
    extras_require={"spatial": ["pysal>2.0.0"],
                    "dimension_reduction": ["fitsne>=1.0.1"],
                    "test": ['sympy>=1.4']
                   },
    packages=find_packages(),
    classifiers=[
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: BSD License",
        "Operating System :: OS Independent",
    ],
#     include_dirs=[np.get_include()],
    author="Xiaojie Qiu, Yan Zhang",
    author_email="xqiu.sc@gmail.com",
    description="Mapping Vector Field of Single Cells",
    long_description=long_description,
    long_description_content_type="text/markdown",
    license="BSD",
    url="https://github.com/aristoteleo/dynamo-release",
    download_url=f"https://github.com/aristoteleo/dynamo-release",
    keywords=[
        "VectorField",
        "singlecell",
        "velocity",
        "scNT-seq",
        "sci-fate",
        "NASC-seq",
        "scSLAMseq",
        "potential",
    ],
)
