.gitignore
.pre-commit-config.yaml
CONTRIBUTING.md
LICENSE.md
README.md
pyproject.toml
setup.cfg
setup.py
.github/workflows/black.yml
.github/workflows/publish.yml
.github/workflows/tests.yml
cortado/__init__.py
cortado/confidence.py
cortado/utils.py
cortado/backends/__init__.py
cortado/backends/blocking.py
cortado/backends/counting.py
cortado/backends/crema.py
cortado/backends/none.py
cortado/backends/registry.py
cortado/protein/__init__.py
cortado/protein/confidence.py
cortado/protein/scoring.py
cortado_ms.egg-info/PKG-INFO
cortado_ms.egg-info/SOURCES.txt
cortado_ms.egg-info/dependency_links.txt
cortado_ms.egg-info/requires.txt
cortado_ms.egg-info/top_level.txt
data/2017dec27_overlap_dia_6b_rep1_604to616.dia.features.txt
docs/Makefile
docs/backends.rst
docs/conf.py
docs/index.rst
docs/quickstart.rst
docs/_static/cortado_logo.png
tests/__init__.py
tests/conftest.py
tests/unit_tests/__init__.py
tests/unit_tests/test_confidence.py
tests/unit_tests/test_utils.py
tests/unit_tests/backends/__init__.py
tests/unit_tests/backends/test_blocking.py
tests/unit_tests/backends/test_counting.py
tests/unit_tests/backends/test_crema.py
tests/unit_tests/backends/test_registry.py
tests/unit_tests/protein/__init__.py
tests/unit_tests/protein/test_confidence.py
tests/unit_tests/protein/test_scoring.py