.gitignore
LICENSE.txt
Makefile
Pipfile
Pipfile.lock
README.md
__init__.py
conf.py
index.rst
make.bat
setup.py
.idea/.gitignore
.idea/3DPhyloTrees.iml
.idea/misc.xml
.idea/modules.xml
.idea/other.xml
.idea/vcs.xml
.idea/inspectionProfiles/Project_Default.xml
.idea/inspectionProfiles/profiles_settings.xml
3dtrees_nbingo.egg-info/PKG-INFO
3dtrees_nbingo.egg-info/SOURCES.txt
3dtrees_nbingo.egg-info/dependency_links.txt
3dtrees_nbingo.egg-info/top_level.txt
agglomerate/__init__.py
agglomerate/agglomerate_3d.py
agglomerate/batch_agglomerate_3d.py
data/__init__.py
data/data_loader.py
data/data_types.py
metrics/__init__.py
metrics/metric_utils.py